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cropseq puro v2  (Addgene inc)


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    Structured Review

    Addgene inc cropseq puro v2
    Cropseq Puro V2, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 20 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cropseq+puro+v2/CROPseq-puro-v2+(Plasmid+%23127458)/bio_rxiv__64898__2026__02__10__705126-301-9-10
    Average 93 stars, based on 20 article reviews
    cropseq puro v2 - by Bioz Stars, 2026-10
    93/100 stars

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    Related Articles

    Software:

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. ..

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: .. 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites.

    Article Title: Optical Pooled Screening for the Discovery of Regulators of the Alternative Lengthening of Telomeres Pathway
    Article Snippet: .. Either the CRISPick [ ] or sgRNA Scorer [ ] web-based software was used to design sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting controls. sgRNA sequences were individually synthesized (IDT) and independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. ..

    CRISPR:

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. ..

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: .. 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites.

    Article Title: Optical Pooled Screening for the Discovery of Regulators of the Alternative Lengthening of Telomeres Pathway
    Article Snippet: .. Either the CRISPick [ ] or sgRNA Scorer [ ] web-based software was used to design sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting controls. sgRNA sequences were individually synthesized (IDT) and independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. ..

    Knock-Out:

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. ..

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: .. 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites.

    Article Title: Optical Pooled Screening for the Discovery of Regulators of the Alternative Lengthening of Telomeres Pathway
    Article Snippet: .. Either the CRISPick [ ] or sgRNA Scorer [ ] web-based software was used to design sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting controls. sgRNA sequences were individually synthesized (IDT) and independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. ..

    Synthesized:

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. ..

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: .. 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites.

    Article Title: Optical Pooled Screening for the Discovery of Regulators of the Alternative Lengthening of Telomeres Pathway
    Article Snippet: .. Either the CRISPick [ ] or sgRNA Scorer [ ] web-based software was used to design sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting controls. sgRNA sequences were individually synthesized (IDT) and independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. ..

    Clone Assay:

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. ..

    Article Title: Mapping multimodal phenotypes to perturbations in cells and tissue with CRISPRmap.
    Article Snippet: .. Amplified oligo pools were cloned into a modified CROPseq-puro-v2 (Addgene, 127458) vector that removed the original scaffold sequence (referred to as CRISPRmap-CROPseq) using Nature Biotechnology Article https://doi.org/10.1038/s41587-024-02386-x NEBuilder HiFi DNA Assembly (New England Biolabs, E2621). .. Next, we electroporated into MegaX DH10B electrocompetent cells (Thermo Fisher Scientific, C640003).

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: .. 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites.

    Article Title: Optical Pooled Screening for the Discovery of Regulators of the Alternative Lengthening of Telomeres Pathway
    Article Snippet: .. Either the CRISPick [ ] or sgRNA Scorer [ ] web-based software was used to design sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting controls. sgRNA sequences were individually synthesized (IDT) and independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. ..

    Article Title: High-content image-based pooled screens reveal regulators of synaptogenesis.
    Article Snippet: To verify Cas9 activity, clones were transduced with a guide targeting TFRC (spacer, 5′–GCTATACGCCACATAACCCCC–3′).30 The guide was cloned into CROPseq-puro-v2 (Addgene #127458) with Golden Gate assembly using the Esp3I restriction enzyme, and lentivirus was produced and spinfected as described above. .. To verify Cas9 activity, clones were transduced with a guide targeting TFRC (spacer, 5′–GCTATACGCCACATAACCCCC–3′).30 The guide was cloned into CROPseq-puro-v2 (Addgene #127458) with Golden Gate assembly using the Esp3I restriction enzyme, and lentivirus was produced and spinfected as described above. ..

    Article Title: High-content image-based pooled screens reveal regulators of synaptogenesis
    Article Snippet: .. The guide was cloned into CROPseq-puro-v2 (Addgene #127458) with Golden Gate assembly using the Esp3I restriction enzyme, and lentivirus was produced and spinfected as described above. ..

    Expressing:

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. ..

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: .. 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites.

    Article Title: Optical Pooled Screening for the Discovery of Regulators of the Alternative Lengthening of Telomeres Pathway
    Article Snippet: .. Either the CRISPick [ ] or sgRNA Scorer [ ] web-based software was used to design sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting controls. sgRNA sequences were individually synthesized (IDT) and independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. ..

    other:

    Article Title: Mapping multimodal phenotypes to perturbations in cells and tissue with CRISPRmap
    Article Snippet: HEK293FT cells (Thermo Fisher Scientific, R70007 ) were cultured in DMEM (Gibco, 11965092) supplemented with heat-inactivated 10% FBS (American Type Culture Collection (ATCC), 30–2020) and 100 U ml −1 penicillin–streptomycin (Thermo Fisher Scientific, 15140163).

    Amplification:

    Article Title: Mapping multimodal phenotypes to perturbations in cells and tissue with CRISPRmap.
    Article Snippet: .. Amplified oligo pools were cloned into a modified CROPseq-puro-v2 (Addgene, 127458) vector that removed the original scaffold sequence (referred to as CRISPRmap-CROPseq) using Nature Biotechnology Article https://doi.org/10.1038/s41587-024-02386-x NEBuilder HiFi DNA Assembly (New England Biolabs, E2621). .. Next, we electroporated into MegaX DH10B electrocompetent cells (Thermo Fisher Scientific, C640003).

    Article Title: X-CODE: a dual RNA barcoding system for multi-platform clonal tracking and spatial phenotyping
    Article Snippet: .. For add-ons integration, the scaffold-gRNA segment was amplified from CROPseq-puro-v2 (Addgene; #127458) using primers ( - Add-ons Primers) containing BbsI (forward) and XbaI (reverse) sites with an ACAC linker, followed by PCR purification, digestion, and gel purification. ..

    Modification:

    Article Title: Mapping multimodal phenotypes to perturbations in cells and tissue with CRISPRmap.
    Article Snippet: .. Amplified oligo pools were cloned into a modified CROPseq-puro-v2 (Addgene, 127458) vector that removed the original scaffold sequence (referred to as CRISPRmap-CROPseq) using Nature Biotechnology Article https://doi.org/10.1038/s41587-024-02386-x NEBuilder HiFi DNA Assembly (New England Biolabs, E2621). .. Next, we electroporated into MegaX DH10B electrocompetent cells (Thermo Fisher Scientific, C640003).

    Sequencing:

    Article Title: Mapping multimodal phenotypes to perturbations in cells and tissue with CRISPRmap.
    Article Snippet: .. Amplified oligo pools were cloned into a modified CROPseq-puro-v2 (Addgene, 127458) vector that removed the original scaffold sequence (referred to as CRISPRmap-CROPseq) using Nature Biotechnology Article https://doi.org/10.1038/s41587-024-02386-x NEBuilder HiFi DNA Assembly (New England Biolabs, E2621). .. Next, we electroporated into MegaX DH10B electrocompetent cells (Thermo Fisher Scientific, C640003).

    Cloning:

    Article Title: Optical pooled screening for the discovery of regulators of the alternative lengthening of telomeres pathway.
    Article Snippet: .. 436 4.3.sgRNA design and cloning 437 Either the CRISPick [42] or sgRNA Scorer [43] web-based software was used to design 438 sgRNA CRISPR knock-out (KO) sequences targeting genes of interest as well as non439 targeting controls. sgRNA sequences were individually synthesized (IDT) and 440 independently cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide441 Puro (Addgene #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi 442 DNA Assembly (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites. .. Either the 443 CRISPick [42] or sgRNA Scorer [43] web-based software was used to design sgRNA 444 CRISPR knock-out (KO) sequences targeting genes of interest as well as non-targeting 445 controls. sgRNA sequences were individually synthesized (IDT) and independently 446 cloned into lentiviral sgRNA expression vectors, either CROPseq-Guide-Puro (Addgene 447 #86708) or CROPseq-puro-v2 (Addgene #127458), using NEBuilder HiFi DNA Assembly 448 (NEB #E5520S) and BsmBI (NEB #0739S) restriction sites.

    Activity Assay:

    Article Title: High-content image-based pooled screens reveal regulators of synaptogenesis.
    Article Snippet: To verify Cas9 activity, clones were transduced with a guide targeting TFRC (spacer, 5′–GCTATACGCCACATAACCCCC–3′).30 The guide was cloned into CROPseq-puro-v2 (Addgene #127458) with Golden Gate assembly using the Esp3I restriction enzyme, and lentivirus was produced and spinfected as described above. .. To verify Cas9 activity, clones were transduced with a guide targeting TFRC (spacer, 5′–GCTATACGCCACATAACCCCC–3′).30 The guide was cloned into CROPseq-puro-v2 (Addgene #127458) with Golden Gate assembly using the Esp3I restriction enzyme, and lentivirus was produced and spinfected as described above. ..

    Transduction:

    Article Title: High-content image-based pooled screens reveal regulators of synaptogenesis.
    Article Snippet: To verify Cas9 activity, clones were transduced with a guide targeting TFRC (spacer, 5′–GCTATACGCCACATAACCCCC–3′).30 The guide was cloned into CROPseq-puro-v2 (Addgene #127458) with Golden Gate assembly using the Esp3I restriction enzyme, and lentivirus was produced and spinfected as described above. .. To verify Cas9 activity, clones were transduced with a guide targeting TFRC (spacer, 5′–GCTATACGCCACATAACCCCC–3′).30 The guide was cloned into CROPseq-puro-v2 (Addgene #127458) with Golden Gate assembly using the Esp3I restriction enzyme, and lentivirus was produced and spinfected as described above. ..

    Produced:

    Article Title: High-content image-based pooled screens reveal regulators of synaptogenesis.
    Article Snippet: To verify Cas9 activity, clones were transduced with a guide targeting TFRC (spacer, 5′–GCTATACGCCACATAACCCCC–3′).30 The guide was cloned into CROPseq-puro-v2 (Addgene #127458) with Golden Gate assembly using the Esp3I restriction enzyme, and lentivirus was produced and spinfected as described above. .. To verify Cas9 activity, clones were transduced with a guide targeting TFRC (spacer, 5′–GCTATACGCCACATAACCCCC–3′).30 The guide was cloned into CROPseq-puro-v2 (Addgene #127458) with Golden Gate assembly using the Esp3I restriction enzyme, and lentivirus was produced and spinfected as described above. ..

    Article Title: High-content image-based pooled screens reveal regulators of synaptogenesis
    Article Snippet: .. The guide was cloned into CROPseq-puro-v2 (Addgene #127458) with Golden Gate assembly using the Esp3I restriction enzyme, and lentivirus was produced and spinfected as described above. ..

    Polymerase Chain Reaction:

    Article Title: X-CODE: a dual RNA barcoding system for multi-platform clonal tracking and spatial phenotyping
    Article Snippet: .. For add-ons integration, the scaffold-gRNA segment was amplified from CROPseq-puro-v2 (Addgene; #127458) using primers ( - Add-ons Primers) containing BbsI (forward) and XbaI (reverse) sites with an ACAC linker, followed by PCR purification, digestion, and gel purification. ..

    Purification:

    Article Title: X-CODE: a dual RNA barcoding system for multi-platform clonal tracking and spatial phenotyping
    Article Snippet: .. For add-ons integration, the scaffold-gRNA segment was amplified from CROPseq-puro-v2 (Addgene; #127458) using primers ( - Add-ons Primers) containing BbsI (forward) and XbaI (reverse) sites with an ACAC linker, followed by PCR purification, digestion, and gel purification. ..

    Gel Purification:

    Article Title: X-CODE: a dual RNA barcoding system for multi-platform clonal tracking and spatial phenotyping
    Article Snippet: .. For add-ons integration, the scaffold-gRNA segment was amplified from CROPseq-puro-v2 (Addgene; #127458) using primers ( - Add-ons Primers) containing BbsI (forward) and XbaI (reverse) sites with an ACAC linker, followed by PCR purification, digestion, and gel purification. ..



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    https://www.bioz.com/product/cropseq+puro+v2/CROPseq-puro-v2+(Plasmid+%23127458)/bio_rxiv__2025__08__13__669778-281-1-3
    Average 93 stars, based on 1 article reviews
    crop seq v2 plasmid - by Bioz Stars, 2026-10
    93/100 stars
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    Addgene inc cropseq puro
    Cropseq Puro, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cropseq+puro+v2/CROPseq-puro-v2+(Plasmid+%23127458)/pm40273915-837-30-31
    Average 93 stars, based on 1 article reviews
    cropseq puro - by Bioz Stars, 2026-10
    93/100 stars
      Buy from Supplier

    93
    Addgene inc crop seq v2 vector
    Crop Seq V2 Vector, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cropseq+puro+v2/CROPseq-puro-v2+(Plasmid+%23127458)/bio_rxiv__2025__03__17__643814-235-23-26
    Average 93 stars, based on 1 article reviews
    crop seq v2 vector - by Bioz Stars, 2026-10
    93/100 stars
      Buy from Supplier

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